So my brain started to try to flee my skull and run away from trying to avoid having to think about how Neo can blow up machines. But after reading some comments from others around the web here's how I see it in condensed form.
Neo is special because he has control over the Matrix -> The machines are powered by the energy of the matrix (becoming part of the matrix in a sense) -> Neo's power extends to them because of that connection (Source, Architect, etc.)
I also think it was purposefully left vague so the bro's can keep moving the plot along in other mediums (games, tv series, board games, etc.)
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